Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G05380.2

Identification

Species:
Arabidopsis thaliana
Locus
AT1G05380
Gene model
AT1G05380.2
Description
similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G14920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71166.1); contains InterPro domain Acyl-CoA N-acyltransferase (InterPro:IPR016181); contains InterP
Family
PHD
3D structure (top 5)
1XWH 1MM2 2PUY 2RO1 2YQL
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470539 Score: 1

Arabidopsis thaliana

AT1G05380.1 Score: 1
AT1G05380.2 Score: 1

Arabidopsis thaliana

AT1G05380.1 Score: 1
AT1G05380.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g53630.1 Score: 1

Arabidopsis thaliana

AT1G05380.1 Score: 1
AT1G05380.2 Score: 1

Vitis vinifera

GSVIVP00019987001 Score: 1

Expression data

Expressed Sequence Tags

At.15326
Arabidopsis thaliana unknown protein (AT1G05380) mRNA, complete cds /cds=p(296,3712) /gb=NM_001123761
Hv.19274
HF01H03T HF Hordeum vulgare subsp. vulgare cDNA clone HF01H03 5-PRIME, mRNA sequence /clone=HF01H03 /clone_end=5' /gb=BQ464132
Os.89338
C27324 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA clone C51602_3A, mRNA sequence /clone=C51602_3A /gb=C27324

Domain Architecture

PHD PF00628 AT1G05380.2
DomainStartEndBit scoreE-value
PHD62767063.66.9e-16

Sequences