Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G05830.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G05830
Gene model
AT1G05830.1
Description
trithorax protein, putative / PHD finger family protein / SET domain-containing protein
Family
PHD
3D structure (top 5)
3H6L 3BO5 1ML9 1MVH 2R3A
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

311665 Score: 1

Arabidopsis thaliana

AT1G05830.1 Score: 1
AT1G05830.2 Score: 1

Arabidopsis thaliana

AT1G05830.1 Score: 1
AT1G05830.2 Score: 1

Carica papaya

evm.TU.supercontig_50.131 Score: 1

Populus trichocarpa

246366 Score: 1
755956 Score: 1

Arabidopsis thaliana

AT1G05830.1 Score: 1
AT1G05830.2 Score: 1
AT2G31650.1 Score: 1

Chlamydomonas reinhardtii

172711 Score: 1

Arabidopsis thaliana

AT1G05830.1 Score: 1
AT1G05830.2 Score: 1

Expression data

Expressed Sequence Tags

At.14356
Arabidopsis thaliana ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (ATX1) mRNA, complete cds /cds=p(1,3189) /gb=NM_179839
At.46306
Arabidopsis thaliana mRNA for tri-thorax like protein, clone: RAFL07-12-E24 /gb=AK226560
Hv.15798
HVSMEl0010L24f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0010L24f, mRNA sequence /clone=HVSMEl0010L24f /gb=BI948766
Os.7059
Oryza sativa Japonica Group cDNA clone:J033074A15, full insert sequence /cds=p(186,3254) /gb=AK074022
Pba.7487
WS02530.B21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_M18 3', mRNA sequence /clone=WS02530_M18 /clone_end=3' /gb=DT486369
Pth.7487
WS02530.B21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_M18 3', mRNA sequence /clone=WS02530_M18 /clone_end=3' /gb=DT486369

Domain Architecture

PWWP PF00855 AT1G05830.1
DomainStartEndBit scoreE-value
PWWP31238225.62.1e-05
FYRN42748077.83.6e-20
FYRC485573129.31.1e-35
PHD59364228.65.9e-06
SET8861016178.12.3e-50

Sequences