Gene model: AT1G08540.1

Species: Arabidopsis thaliana Locus AT1G08540 Gene model AT1G08540.1 Gene names and synonyms SIG1 iHOP SIG2 iHOP SIGA iHOP SIGB iHOP Description SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor Family Sigma70-like 3D structure (top 5) 1RP3 1SIG 1L0O 1L9Z 2A6H
	PDB entry: 1RP3 1SIG 1L0O 1L9Z 2A6H 1TLH 1KU3 1TTY 1OR7 2P7V 2Q1Z 1XSV

• KEGG
• TAIR

• GabiPD
• PhosPhAT
• ProMEX

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Cyanidioschyzon merolae

CMQ213C Score: 1

Carica papaya

evm.TU.supercontig_73.28 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g26160.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

780378 Score: 1
834586 Score: 1

Sorghum bicolor

5011593 Score: 1

Zea mays

GRMZM2G143392_P01 Score: 1

• AthaMap - TFBS in the promoter of this gene
• eFP Browser - Uni Toronto - Natural Variation
• MPSS data
• eFP Browser - Uni Toronto - Abiotic stresses
• eFP Browser - Uni Toronto - Developmental processes
• NCBI EST Profile Viewer (UniGene: At.23349)
• NCBI EST Profile Viewer (UniGene: Hv.20577)
• NCBI EST Profile Viewer (UniGene: Hv.27771)
• NCBI EST Profile Viewer (UniGene: Mtr.9120)
• NCBI EST Profile Viewer (UniGene: Os.28459)
• NCBI EST Profile Viewer (UniGene: Os.88896)
• NCBI EST Profile Viewer (UniGene: Ppa.1)
• NCBI EST Profile Viewer (UniGene: Vvi.15436)

At.23349

Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543

Hv.20577

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843

Hv.27771

BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686

Mtr.9120

EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325

Os.28459

Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099

Os.88896

Oryza sativa Japonica Group cDNA clone:001-034-B01, full insert sequence /cds=p(243,1865) /gb=AK060821

Ppa.1

Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds /cds=p(236,1975) /gb=AB046872

Vvi.15436

WIN021.C21_B06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN021_B06 3', mRNA sequence /clone=WIN021_B06 /clone_end=3' /gb=EC923412

protein sequence
transcript sequence