Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G11100.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G11100
Gene model
AT1G11100.1
Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Family
SNF2
3D structure (top 5)
1Z5Z 1Z63 1WP9 2FWR 1Z3I
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

471244 Score: 1

Cyanidioschyzon merolae

CMI119C Score: 1

Vitis vinifera

GSVIVP00013670001 Score: 1.008
GSVIVP00004267001 Score: 1

Expression data

Expressed Sequence Tags

At.15795
Arabidopsis thaliana putative DNA-binding protein (At1g50410) mRNA, complete cds /cds=p(190,3135) /gb=AY039939
At.36526
Arabidopsis thaliana EDA16 (embryo sac development arrest 16) (EDA16) mRNA, complete cds /cds=p(742,4110) /gb=NM_001124053
At.71074
Arabidopsis thaliana SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (AT1G11100) mRNA, complete cds /cds=p(1,3681) /gb=NM_100983
Os.17162
Oryza sativa Japonica Group cDNA clone:J013119B08, full insert sequence /gb=AK072085
Os.33780
Oryza sativa Japonica Group cDNA clone:J023054E15, full insert sequence /gb=AK070470
Pth.8360
WS02526.BR_K04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02526_K04 5', mRNA sequence /clone=WS02526_K04 /clone_end=5' /gb=DT479679
Sbi.10681
OX1_64_A10.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_64_A10_A002 5', mRNA sequence /clone=OX1_64_A10_A002 /clone_end=5' /gb=CN138552 /gi=45973096
Vvi.23513
S1G07975 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G07975, mRNA sequence /clone=S1G07975 /gb=EE077143

Domain Architecture

SNF2_N PF00176 AT1G11100.1
DomainStartEndBit scoreE-value
SNF2_N545885174.62.6e-49
zf-C3HC491995918.60.00069
Helicase_C1090116883.66.5e-22

Sequences