Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G21570.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G21570
Gene model
AT1G21570.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
2D9N 2RPP 2RHK 3D2N 3D2Q
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_1156.4 Score: 1

Populus trichocarpa

204649 Score: 1

Selaginella moellendorffii

70673 Score: 1

Vitis vinifera

GSVIVP00015456001 Score: 1

Expression data

Expressed Sequence Tags

At.41648
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G21570) mRNA, complete cds /cds=p(1,1413) /gb=NM_102006
Hv.29470
RUS113B09r HY Hordeum vulgare subsp. vulgare cDNA clone HY02I16, mRNA sequence /clone=HY02I16 /gb=FD524654
Mtr.21570
MEUAY59TR JCVI-MT2 Medicago truncatula cDNA 3', mRNA sequence /clone_end=3' /gb=GE351191
Pba.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Pth.6362
WS02543.B21_N01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_N01 3', mRNA sequence /clone=WS02543_N01 /clone_end=3' /gb=DT490017
Vvi.5890
WIN025.TB24.1_B18 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_B18 3', mRNA sequence /clone=WIN025_B18 /clone_end=3' /gb=EC924347

Domain Architecture

zf-CCCH PF00642 AT1G21570.1
DomainStartEndBit scoreE-value
zf-CCCH24126810.20.062
zf-CCCH2692932.50.65
zf-CCCH29632012.40.031
zf-CCCH32334814.40.017
zf-CCCH34937113.20.025

Sequences