Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G21700.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G21700
Gene model
AT1G21700.1
Gene names and synonyms
ATSWI3C iHOP
CHB4 iHOP
Description
ATSWI3C (Arabidopsis thaliana switching protein 3C); DNA binding
Family
MYB-related
3D structure (top 5)
2FQ3 2DCE 2COM 2YUS 2YUM
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472410 Score: 1

Chlorella sp. NC64A

134832 Score: 1

Micromonas sp. RCC299

104814 Score: 1
112657 Score: 1

Ostreococcus lucimarinus

88885 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g08080.1 Score: 1

Populus trichocarpa

559267 Score: 1

Sorghum bicolor

4822356 Score: 1

Selaginella moellendorffii

63207 Score: 1

Vitis vinifera

GSVIVP00015425001 Score: 1

Zea mays

GRMZM2G038220_P04 Score: 1
GRMZM2G077633_P02 Score: 0.992
GRMZM2G038220_P03 Score: 0.982

Expression data

Expressed Sequence Tags

At.41645
Arabidopsis thaliana putative transcriptional regulatory protein (At1g21700) mRNA, complete cds /cds=p(160,2583) /gb=AY091026
Hv.29353
HU02H10r HU Hordeum vulgare subsp. vulgare cDNA clone HU02H10 5-PRIME, mRNA sequence /clone=HU02H10 /clone_end=5' /gb=BQ465032
Os.9655
Oryza sativa (japonica cultivar-group) Os12g0176700 (Os12g0176700) mRNA, complete cds /cds=p(1,1809) /gb=NM_001072830
Vvi.1002
S2B11008 Buds (VvS2) Vitis vinifera cDNA clone S2B11008, mRNA sequence /clone=S2B11008 /gb=EE077908

Domain Architecture

SWIRM PF04433 AT1G21700.1
DomainStartEndBit scoreE-value
SWIRM176265120.64.7e-33
Myb_DNA-binding40044546.87.4e-11

Sequences