Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G30460.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G30460
Gene model
AT1G30460.1
Gene names and synonyms
ATCPSF30 iHOP
CPSF30 iHOP
Description
ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding
Family
C3H
3D structure (top 5)
2YU6 2YUD 2D9N 2RHK 2RPP
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

890588 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g46400.1 Score: 1

Populus trichocarpa

234849 Score: 1

Sorghum bicolor

5032111 Score: 1

Vitis vinifera

GSVIVP00028411001 Score: 1

Expression data

Expressed Sequence Tags

At.40546
Arabidopsis thaliana ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (ATCPSF30/CPSF30) mRNA, complete cds /cds=p(80,1975) /gb=NM_102782
Os.68827
Oryza sativa (japonica cultivar-group) Os06g0677700 (Os06g0677700) mRNA, complete cds /cds=p(1,1998) /gb=NM_001064894
Pba.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115
Pth.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115

Domain Architecture

zf-CCCH PF00642 AT1G30460.1
DomainStartEndBit scoreE-value
zf-CCCH618619.70.0034
zf-CCCH891149.50.078
zf-CCCH115140160.011
YTH281375159.59.1e-45

Sequences