Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G30460.2

Identification

Species:
Arabidopsis thaliana
Locus
AT1G30460
Gene model
AT1G30460.2
Gene names and synonyms
ATCPSF30 iHOP
CPSF30 iHOP
Description
ATCPSF30/CPSF30
Family
C3H
3D structure (top 5)
2D9N 2RPP 2E5S 2RHK 1M9O
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

138954 Score: 1

Carica papaya

evm.TU.supercontig_17.92 Score: 1

Coccomyxa sp. C-169

75427 Score: 1

Micromonas pusilla CCMP1545

25397 Score: 1

Zea mays

GRMZM2G049027_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40546
Arabidopsis thaliana ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (ATCPSF30/CPSF30) mRNA, complete cds /cds=p(80,1975) /gb=NM_102782
Os.68827
Oryza sativa (japonica cultivar-group) Os06g0677700 (Os06g0677700) mRNA, complete cds /cds=p(1,1998) /gb=NM_001064894
Pba.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115
Pth.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115
Ptp.11159
A083P09.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A083P09 3', mRNA sequence /clone=A083P09 /clone_end=3' /gb=CK088987

Domain Architecture

zf-CCCH PF00642 AT1G30460.2
DomainStartEndBit scoreE-value
zf-CCCH618619.70.0034
zf-CCCH891149.50.078
zf-CCCH115140160.011

Sequences