Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G43700.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G43700
Gene model
AT1G43700.1
Gene names and synonyms
VIP1 iHOP
Description
VIP1 (VIRE2-INTERACTING PROTEIN 1); transcription factor
Family
bZIP
3D structure (top 5)
1C1G 1I84
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473775 Score: 1

Carica papaya

evm.TU.supercontig_21.182 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g06520.1 Score: 1

Sorghum bicolor

5005323 Score: 1

Zea mays

GRMZM2G118393_P01 Score: 1

Expression data

Expressed Sequence Tags

At.22614
Arabidopsis thaliana VIP1 (VIRE2-INTERACTING PROTEIN 1); transcription factor (VIP1) mRNA, complete cds /cds=p(122,1147) /gb=NM_103495
At.27060
Arabidopsis thaliana ATBZIP52 (ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 52); DNA binding / transcription factor (ATBZIP52) mRNA, complete cds /cds=p(186,1199) /gb=NM_100562
At.2835
Arabidopsis thaliana bZIP protein (AT4G38900) mRNA, complete cds /cds=p(354,1997) /gb=NM_179189
At.503
Arabidopsis thaliana bZIP transcription factor family protein (AT2G40620) mRNA, complete cds /cds=p(107,1210) /gb=NM_129624
At.70161
Arabidopsis thaliana bZIP transcription factor, putative (bZIP69) (AT1G06070) mRNA, complete cds /cds=p(250,1521) /gb=NM_100488
At.99
Arabidopsis thaliana At2g31370/T28P16.14 mRNA, complete cds /cds=p(299,1495) /gb=AY057534
Hv.30815
BJ462913 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags24o09 5', mRNA sequence /clone=bags24o09 /clone_end=5' /gb=BJ462913
Mtr.2023
Medicago truncatula clone MTYFL_FM_FN_FO1G-O-20 unknown mRNA /cds=p(140,862) /gb=BT053041
Mtr.4015
EST5311937 GESD Medicago truncatula cDNA clone pGESD7I20 5' end, mRNA sequence /clone=pGESD7I20 /clone_end=5' /gb=BI310187
Os.15927
Oryza sativa (japonica cultivar-group) Os08g0543900 (Os08g0543900) mRNA, complete cds /cds=p(1,1374) /gb=NM_001068938
Os.19640
Oryza sativa Japonica Group cDNA clone:J013048G15, full insert sequence /gb=AK065995
Os.46836
Oryza sativa Japonica Group cDNA clone:002-146-H05, full insert sequence /gb=AK108607
Os.54213
Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence /gb=AK102562
Pba.4670
WS01228.B21_D10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_D10 3', mRNA sequence /clone=WS01228_D10 /clone_end=3' /gb=DT476077
Ppa.14974
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_201072) mRNA, complete cds /cds=p(1,1050) /gb=XM_001785687
Pth.4670
Populus trichocarpa clone WS0128_N17 unknown mRNA /cds=p(111,1133) /gb=EF148222
Sbi.19770
RTHAIR1_1_D03.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_1_D03_A002 5', mRNA sequence /clone=RTHAIR1_1_D03_A002 /clone_end=5' /gb=EH406629

Domain Architecture

bZIP_2 PF07716 AT1G43700.1
DomainStartEndBit scoreE-value
bZIP_2192246314.3e-06
bZIP_119425526.88e-05

Sequences