Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G49720.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G49720
Gene model
AT1G49720.1
Gene names and synonyms
ABF1 iHOP
Description
ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor
Family
bZIP
3D structure (top 5)
1HJB 1GU4 1T2K 2DGC 1A02
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474101 Score: 1

Selaginella moellendorffii

266892 Score: 1
67189 Score: 1

Arabidopsis thaliana

AT1G49720.1 Score: 1
AT4G34000.1 Score: 1
AT4G34000.2 Score: 1

Expression data

Expressed Sequence Tags

At.23993
Arabidopsis thaliana ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription activator/ transcription factor (ABF4) mRNA, complete cds /cds=p(168,1463) /gb=NM_112816
At.46187
Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds /cds=p(154,1332) /gb=BT008647
Mtr.8268
MTYEX19TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV262556
Os.11781
Oryza sativa Japonica Group cDNA clone:J013109E06, full insert sequence /cds=p(218,1291) /gb=AK072062
Os.97858
Oryza sativa Japonica Group cDNA clone:J013049N23, full insert sequence /cds=p(75,1205) /gb=AK065873
Pba.7155
WS02534.B21_A12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_A12 3', mRNA sequence /clone=WS02534_A12 /clone_end=3' /gb=DT487561
Pth.7155
WS02534.B21_A12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_A12 3', mRNA sequence /clone=WS02534_A12 /clone_end=3' /gb=DT487561
Vvi.1056
EST 6060 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT063E05 3', mRNA sequence /clone=RT063E05 /clone_end=3' /gb=BQ797122
Vvi.21937
C1G02732 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G02732, mRNA sequence /clone=C1G02732 /gb=EE062510

Domain Architecture

bZIP_1 PF00170 AT1G49720.1
DomainStartEndBit scoreE-value
bZIP_130936644.73.3e-10
bZIP_230936336.97.1e-08

Sequences