Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G49950.3

Identification

Species:
Arabidopsis thaliana
Locus
AT1G49950
Gene model
AT1G49950.3
Gene names and synonyms
ATTRB1 iHOP
TRB1 iHOP
Description
ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding
Family
MYB-related
3D structure (top 5)
1HST 1UHM 1USS 1UST 1GHC
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

474123 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 0.965

Populus trichocarpa

557527 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Sorghum bicolor

4868619 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Selaginella moellendorffii

413266 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Vitis vinifera

GSVIVP00001485001 Score: 1

Arabidopsis thaliana

AT1G49950.1 Score: 1
AT1G49950.2 Score: 1
AT1G49950.3 Score: 1

Zea mays

GRMZM2G095239_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27250
Arabidopsis thaliana ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding (ATTRB1/TRB1) mRNA, complete cds /cds=p(304,1206) /gb=NM_202269
Hv.2421
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence /gb=AK249564
Mtr.17478
METB235TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY477379
Mtr.7648
META350TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474260
Os.8369
Oryza sativa Japonica Group cDNA clone:J033117F01, full insert sequence /gb=AK103040
Vvi.8843
WIN0517.C21_L21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0517_L21 3', mRNA sequence /clone=WIN0517_L21 /clone_end=3' /gb=EC939798

Domain Architecture

Myb_DNA-binding PF00249 AT1G49950.3
DomainStartEndBit scoreE-value
Myb_DNA-binding55731.33.5e-06
Linker_histone12218521.85.4e-06

Sequences