Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G53320.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G53320
Gene model
AT1G53320.1
Gene names and synonyms
AtTLP7 iHOP
Description
AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

892366 Score: 1

Carica papaya

evm.TU.supercontig_77.11 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g43850.1 Score: 1

Populus trichocarpa

811813 Score: 1

Sorghum bicolor

4768598 Score: 1

Zea mays

GRMZM2G134775_P01 Score: 1

Expression data

Expressed Sequence Tags

At.24299
Arabidopsis thaliana AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (AtTLP7) mRNA, complete cds /cds=p(76,1215) /gb=NM_104210
Mtr.13388
META224TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474143
Os.10160
Oryza sativa (japonica cultivar-group) Os05g0514300 (Os05g0514300) mRNA, complete cds /cds=p(246,1364) /gb=NM_001062568
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.22785
Oryza sativa Japonica Group cDNA clone:J023048A08, full insert sequence /cds=p(114,1184) /gb=AK070401
Os.31726
Oryza sativa Japonica Group cDNA clone:002-118-B03, full insert sequence /cds=p(68,1174) /gb=AK106853
Os.80328
Oryza sativa (japonica cultivar-group) Os05g0560400 (Os05g0560400) mRNA, complete cds /cds=p(1,1059) /gb=NM_001062843
Vvi.6639
WIN035.C21_E09 Cab Sauv seed normalized (WIN03) Vitis vinifera cDNA clone WIN035_E09 3', mRNA sequence /clone=WIN035_E09 /clone_end=3' /gb=EC928480

Domain Architecture

F-box PF00646 AT1G53320.1
DomainStartEndBit scoreE-value
F-box429722.20.002
Tub108373391.81.1e-114

Sequences