Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G54390.4

Identification

Species:
Arabidopsis thaliana
Locus
AT1G54390
Gene model
AT1G54390.4
Description
PHD finger protein-related
Family
PHD
3D structure (top 5)
1WEU 2JMI 3C6W 2G6Q 2VNF
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

142851 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Carica papaya

evm.TU.supercontig_51.103 Score: 1

Micromonas sp. RCC299

59034 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g53700.1 Score: 1

Physcomitrella patens

192056 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Populus trichocarpa

780260 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Sorghum bicolor

4867905 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Selaginella moellendorffii

92651 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Vitis vinifera

GSVIVP00025484001 Score: 1

Arabidopsis thaliana

AT1G54390.3 Score: 1
AT1G54390.4 Score: 1

Zea mays

GRMZM2G011434_P01 Score: 1
GRMZM2G011434_P02 Score: 1

Expression data

Expressed Sequence Tags

At.26780
Arabidopsis thaliana PHD finger protein-related (AT1G54390) mRNA, complete cds /cds=p(82,1002) /gb=NM_104317
Mtr.12286
EST639260 MTUS Medicago truncatula cDNA clone MTUS-41F3, mRNA sequence /clone=MTUS-41F3 /gb=CA921542
Os.14952
Oryza sativa Japonica Group cDNA clone:001-207-H03, full insert sequence /cds=p(153,914) /gb=AK106146
Ppa.5580
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_192056) mRNA, complete cds /cds=p(151,942) /gb=XM_001774118

Domain Architecture

PHD PF00628 AT1G54390.4
DomainStartEndBit scoreE-value
PHD208258483.4e-11

Sequences