Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G71260.1

Identification

Species:
Arabidopsis thaliana
Locus
AT1G71260
Gene model
AT1G71260.1
Gene names and synonyms
ATWHY2 iHOP
Description
ATWHY2 (A. THALIANA WHIRLY 2); DNA binding
Family
PBF-2-like
3D structure (top 5)
1L3A
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

894964 Score: 1

Carica papaya

evm.TU.supercontig_249.7 Score: 1

Coccomyxa sp. C-169

77430 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g06370.1 Score: 1

Populus trichocarpa

414440 Score: 1

Sorghum bicolor

4809056 Score: 1

Vitis vinifera

GSVIVP00031986001 Score: 1

Zea mays

GRMZM2G012262_P01 Score: 1
GRMZM2G012262_P02 Score: 1

Chlamydomonas reinhardtii

186648 Score: 1

Expression data

Expressed Sequence Tags

At.28009
Arabidopsis thaliana ATWHY2 (A. THALIANA WHIRLY 2); DNA binding (ATWHY2) mRNA, complete cds /cds=p(32,748) /gb=NM_105795
Hv.12913
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence /gb=AK249976
Mtr.14110
MEUA874TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE344087
Os.32450
Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence /cds=p(58,744) /gb=AK104768
Pba.3139
WS02548.C21_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_G11 3', mRNA sequence /clone=WS02548_G11 /clone_end=3' /gb=DT491657
Pth.3139
Populus trichocarpa clone WS0115_A07 unknown mRNA /cds=p(62,751) /gb=EF146025
Vvi.15216
WIN1148.C21_I21 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1148_I21 3', mRNA sequence /clone=WIN1148_I21 /clone_end=3' /gb=EC993493

Domain Architecture

Whirly PF08536 AT1G71260.1
DomainStartEndBit scoreE-value
Whirly59197396.63.8e-116

Sequences