Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT2G18280.2

Identification

Species:
Arabidopsis thaliana
Locus
AT2G18280
Gene model
AT2G18280.2
Gene names and synonyms
AtTLP2 iHOP
Description
AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480735 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Chlorella sp. NC64A

28000 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Populus trichocarpa

655329 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Sorghum bicolor

5055722 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Vitis vinifera

GSVIVP00024911001 Score: 1

Chlamydomonas reinhardtii

17453 Score: 1

Arabidopsis thaliana

AT2G18280.1 Score: 1
AT2G18280.2 Score: 1

Expression data

Expressed Sequence Tags

At.17482
Arabidopsis thaliana AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor (AtTLP1) mRNA, complete cds /cds=p(211,1578) /gb=NM_179563
At.18294
Arabidopsis thaliana AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor (AtTLP6) mRNA, complete cds /cds=p(273,1514) /gb=NM_103621
At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.46725
Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

F-box PF00646 AT2G18280.2
DomainStartEndBit scoreE-value
F-box4610116.90.074
Tub112387426.24.6e-125

Sequences