Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT2G25170.1

Identification

Species:
Arabidopsis thaliana
Locus
AT2G25170
Gene model
AT2G25170.1
Gene names and synonyms
CHD3 iHOP
CHR6 iHOP
GYM iHOP
PKL iHOP
SSL2 iHOP
Description
PKL (PICKLE)
Family
PHD
3D structure (top 5)
3DMQ 1Z3I 2FWR 1Z5Z 1WP9
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

344116 Score: 1

Chlorella sp. NC64A

144734 Score: 1

Carica papaya

evm.TU.supercontig_127.13 Score: 1

Micromonas sp. RCC299

64845 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g08480.1 Score: 1

Physcomitrella patens

145844 Score: 1

Populus trichocarpa

415868 Score: 1

Sorghum bicolor

5010592 Score: 1

Selaginella moellendorffii

155996 Score: 1

Zea mays

GRMZM2G154100_P01 Score: 1
GRMZM2G154100_P02 Score: 0.992

Expression data

Expressed Sequence Tags

At.11745
Arabidopsis thaliana PKL (PICKLE) (PKL) mRNA, complete cds /cds=p(25,4179) /gb=NM_128074
At.54572
Arabidopsis thaliana chromatin remodeling factor, putative (AT4G31900) mRNA, complete cds /cds=p(1,3609) /gb=NM_119341
Hv.20329
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127d19, mRNA sequence /gb=AK251718
Os.87711
Oryza sativa chromatin-remodeling factor CHD3 (PKL) mRNA, complete cds /cds=p(1,4083) /gb=AY062186
Ppa.22788
Physcomitrella patens subsp. patens SNF2 family DNA-dependent ATPase (CHR1512) mRNA, partial cds /cds=p(1,3663) /gb=XM_001758649

Domain Architecture

PHD PF00628 AT2G25170.1
DomainStartEndBit scoreE-value
PHD519649.41.2e-11
Chromo9815849.51.2e-11
Chromo19024057.15.9e-14
ResIII2704556.21.5e-05
SNF2_N276573398.69.7e-117
Helicase_C63070992.91e-24
DUF1087828894124.53.1e-34
DUF108691410573404.2e-99

Sequences