Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT2G25900.1

Identification

Species:
Arabidopsis thaliana
Locus
AT2G25900
Gene model
AT2G25900.1
Gene names and synonyms
ATCTH iHOP
Description
ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor
Family
C3H
3D structure (top 5)
3D2Q 2E5S 2RPP 3D2N 1M9O
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481444 Score: 1

Expression data

Expressed Sequence Tags

At.20940
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G44260) mRNA, complete cds /cds=p(107,1252) /gb=NM_123793
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
At.67031
AV530845 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB010d03F 3', mRNA sequence /clone=FB010d03F /clone_end=3' /gb=AV530845
At.71432
16482 Lambda-PRL2 Arabidopsis thaliana cDNA clone 190C5T7, mRNA sequence /clone=190C5T7 /gb=R90127
Cre.15393
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_182666) mRNA, partial cds /cds=p(119,487) /gb=XM_001693381
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Mtr.14001
METAU86TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY476756
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Vvi.19273
VVH008E08_739651 CabSau Flower Nectary Stage 25 (NECu0025) Vitis vinifera cDNA clone VVH008E08 5, mRNA sequence /clone=VVH008E08 /clone_end=5' /gb=DT014104

Domain Architecture

zf-CCCH PF00642 AT2G25900.1
DomainStartEndBit scoreE-value
zf-CCCH13115630.56.2e-06

Sequences