Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT2G41900.1

Identification

Species:
Arabidopsis thaliana
Locus
AT2G41900
Gene model
AT2G41900.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
2VGE 1N11 1OY3 2FO1 2DVW
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_92.23 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g49170.1 Score: 1
LOC_Os03g49170.3 Score: 0.957

Populus trichocarpa

560536 Score: 1

Sorghum bicolor

4868336 Score: 1

Selaginella moellendorffii

62212 Score: 1

Vitis vinifera

GSVIVP00025561001 Score: 1

Zea mays

GRMZM2G180979_P01 Score: 1
GRMZM2G180979_P02 Score: 1

Expression data

Expressed Sequence Tags

At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.5281
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G12850) mRNA, complete cds /cds=p(261,2381) /gb=NM_121288
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Mtr.4296
EST510150 HOGA Medicago truncatula cDNA clone pHOGA-23E11 5' end, mRNA sequence /clone=pHOGA-23E11 /clone_end=5' /gb=BG648531
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pba.2984
WS01121.BR_A14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01121_A14 5', mRNA sequence /clone=WS01121_A14 /clone_end=5' /gb=DT495629
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5260
WIN025.TB24.1_L08 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN025_L08 3', mRNA sequence /clone=WIN025_L08 /clone_end=3' /gb=EC924525

Domain Architecture

Ank PF00023 AT2G41900.1
DomainStartEndBit scoreE-value
Ank9012323.40.00084
Ank12516033.67e-07
zf-CCCH30232726.40.00011

Sequences