Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT2G47680.1

Identification

Species:
Arabidopsis thaliana
Locus
AT2G47680
Gene model
AT2G47680.1
Description
zinc finger (CCCH type) helicase family protein
Family
C3H
3D structure (top 5)
3BOR 1HEI 2JLQ 3EIQ 1S2M
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483950 Score: 1

Carica papaya

evm.TU.supercontig_9.260 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g15300.1 Score: 1
LOC_Os01g15300.2 Score: 0.955

Sorghum bicolor

143132 Score: 1

Selaginella moellendorffii

173103 Score: 1

Vitis vinifera

GSVIVP00027989001 Score: 1

Zea mays

GRMZM2G146047_P02 Score: 1
GRMZM2G146047_P01 Score: 0.941

Expression data

Expressed Sequence Tags

At.36329
Arabidopsis thaliana zinc finger (CCCH type) helicase family protein (AT2G47680) mRNA, complete cds /cds=p(35,3082) /gb=NM_130336
Os.49825
Oryza sativa Japonica Group cDNA clone:J023078K23, full insert sequence /gb=AK100311
Pth.17511
Populus trichocarpa clone WS0128_O12 /gb=EF148229

Domain Architecture

Helicase_C PF00271 AT2G47680.1
DomainStartEndBit scoreE-value
Helicase_C291384431.1e-09
zf-CCCH72875320.30.0028
zf-CCCH75578123.40.00086

Sequences