Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G12130.1

Identification

Species:
Arabidopsis thaliana
Locus
AT3G12130
Gene model
AT3G12130.1
Description
KH domain-containing protein / zinc finger (CCCH type) family protein
Family
C3H
3D structure (top 5)
2JVZ 1X4N 2P2R 1ZZK 2ANR
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

317994 Score: 1

Ostreococcus lucimarinus

93911 Score: 1

Arabidopsis thaliana

AT3G12130.1 Score: 1
AT5G06770.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10080.1 Score: 1
LOC_Os06g41384.1 Score: 1
LOC_Os06g41384.2 Score: 1

Physcomitrella patens

182782 Score: 1

Sorghum bicolor

4889482 Score: 1
5054839 Score: 1

Arabidopsis thaliana

AT3G12130.1 Score: 1
AT5G06770.1 Score: 1

Selaginella moellendorffii

75886 Score: 1

Vitis vinifera

GSVIVP00025374001 Score: 1

Expression data

Expressed Sequence Tags

At.27694
Arabidopsis thaliana KH domain-containing protein / zinc finger (CCCH type) family protein (AT3G12130) mRNA, complete cds /cds=p(191,937) /gb=NM_112048
At.43568
Arabidopsis thaliana clone 27460 mRNA, complete sequence /cds=p(168,890) /gb=AY086759
Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Os.5810
Oryza sativa Japonica Group cDNA clone:J033107K04, full insert sequence /cds=p(123,1052) /gb=AK121951
Sbi.1446
OX1_53_C02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_53_C02_A002 3', mRNA sequence /clone=OX1_53_C02_A002 /clone_end=3' /gb=CN136740 /gi=45969804

Domain Architecture

zf-CCCH PF00642 AT3G12130.1
DomainStartEndBit scoreE-value
zf-CCCH376324.20.00049
KH_111517755.22.2e-13
zf-CCCH21423941.72.7e-09

Sequences