Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G19290.1

Identification

Species:
Arabidopsis thaliana
Locus
AT3G19290
Gene model
AT3G19290.1
Gene names and synonyms
ABF4 iHOP
AREB2 iHOP
Description
ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription activator/ transcription factor
Family
bZIP
3D structure (top 5)
1HJB 1GU4 1T2K 1DH3 1FOS
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479444 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g52780.1 Score: 1

Vitis vinifera

GSVIVP00036604001 Score: 1

Arabidopsis thaliana

AT3G19290.1 Score: 1
AT4G34000.1 Score: 1
AT4G34000.2 Score: 1

Zea mays

GRMZM2G157722_P01 Score: 1
GRMZM2G178231_P02 Score: 1
GRMZM2G157722_P02 Score: 0.908

Expression data

Expressed Sequence Tags

At.23993
Arabidopsis thaliana ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription activator/ transcription factor (ABF4) mRNA, complete cds /cds=p(168,1463) /gb=NM_112816
At.46187
Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds /cds=p(154,1332) /gb=BT008647
Hv.20024
HVSMEb0001P06f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0001P06f, mRNA sequence /clone=HVSMEb0001P06f /gb=BF627007
Hv.21574
Hordeum vulgare subsp. vulgare bZIP transcription factor ABI5 (ABI5) mRNA, complete cds /cds=p(23,1084) /gb=AY150676
Mtr.8268
MTYEX19TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV262556
Os.11781
Oryza sativa Japonica Group cDNA clone:J013109E06, full insert sequence /cds=p(218,1291) /gb=AK072062
Os.4379
Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds /cds=p(94,1050) /gb=AY323482
Os.54299
Oryza sativa Japonica Group cDNA clone:J033121M03, full insert sequence /cds=p(205,1179) /gb=AK103188
Os.97858
Oryza sativa Japonica Group cDNA clone:J013049N23, full insert sequence /cds=p(75,1205) /gb=AK065873
Pba.7155
WS02534.B21_A12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_A12 3', mRNA sequence /clone=WS02534_A12 /clone_end=3' /gb=DT487561
Pth.16340
Populus trichocarpa abscisic acid responsive elements-binding protein 2 (ABF2-2) mRNA, complete cds /cds=p(137,1438) /gb=EF405965
Pth.7155
WS02534.B21_A12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_A12 3', mRNA sequence /clone=WS02534_A12 /clone_end=3' /gb=DT487561
Vvi.1056
EST 6060 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT063E05 3', mRNA sequence /clone=RT063E05 /clone_end=3' /gb=BQ797122
Vvi.21937
C1G02732 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G02732, mRNA sequence /clone=C1G02732 /gb=EE062510

Domain Architecture

bZIP_1 PF00170 AT3G19290.1
DomainStartEndBit scoreE-value
bZIP_134840941.33.4e-09
bZIP_234940435.61.7e-07

Sequences