Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G48440.1

Identification

Species:
Arabidopsis thaliana
Locus
AT3G48440
Gene model
AT3G48440.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
1M9O 2E5S 2D9N 2RHK 2RPP
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

906088 Score: 1

Carica papaya

evm.TU.supercontig_4.51 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g18120.1 Score: 1
LOC_Os12g18120.2 Score: 1

Populus trichocarpa

422794 Score: 1

Vitis vinifera

GSVIVP00015900001 Score: 1

Expression data

Expressed Sequence Tags

At.43350
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16 /cds=p(153,1460) /gb=AK228790
At.50258
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G48440) mRNA, complete cds /cds=p(1,1347) /gb=NM_114703
Mtr.16511
EST391989 GVN Medicago truncatula cDNA clone pGVN-58J8, mRNA sequence /clone=pGVN-58J8 /gb=AW980836
Mtr.1706
EST332423 KV3 Medicago truncatula cDNA clone pKV3-13C20, mRNA sequence /clone=pKV3-13C20 /gb=AW736409
Pba.7568
WS02530.BR_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_A02 5', mRNA sequence /clone=WS02530_A02 /clone_end=5' /gb=DT480811
Pth.7568
WS02530.BR_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_A02 5', mRNA sequence /clone=WS02530_A02 /clone_end=5' /gb=DT480811
Pth.9941
WS01224.B21.1_M19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_M19 3', mRNA sequence /clone=WS01224_M19 /clone_end=3' /gb=CV236627
Vvi.8494
WIN012.BR_A13 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN012_A13 5', mRNA sequence /clone=WIN012_A13 /clone_end=5' /gb=EC920688

Domain Architecture

zf-CCCH PF00642 AT3G48440.1
DomainStartEndBit scoreE-value
zf-CCCH11113749.31.3e-11
zf-CCCH15918534.63.6e-07
zf-CCCH20523149.51.2e-11
zf-CCCH34737329.99.6e-06
zf-CCCH39341942.51.5e-09

Sequences