Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G51950.2

Identification

Species:
Arabidopsis thaliana
Locus
AT3G51950
Gene model
AT3G51950.2
Description
zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2FY1 2CPF
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

485553 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Carica papaya

evm.TU.supercontig_197.21 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g48410.1 Score: 1
LOC_Os07g48410.2 Score: 1

Populus trichocarpa

675178 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Sorghum bicolor

5062368 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Selaginella moellendorffii

439924 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Arabidopsis thaliana

AT3G51950.1 Score: 1
AT3G51950.2 Score: 1

Zea mays

GRMZM2G003424_P02 Score: 1

Expression data

Expressed Sequence Tags

At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
At.43143
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT3G51950) mRNA, complete cds /cds=p(520,2142) /gb=NM_001035763
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595

Domain Architecture

zf-CCCH PF00642 AT3G51950.2
DomainStartEndBit scoreE-value
zf-CCCH14917435.32.1e-07
RRM_126032822.70.0012

Sequences