Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G55980.1

Identification

Species:
Arabidopsis thaliana
Locus
AT3G55980
Gene model
AT3G55980.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
1N11 1IKN 1OY3 2F8Y 3D9H
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

486038 Score: 1

Expression data

Expressed Sequence Tags

At.21697
Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds /cds=p(170,1912) /gb=AY056282
At.27663
Arabidopsis thaliana CZF1/ZFAR1; transcription factor (CZF1/ZFAR1) mRNA, complete cds /cds=p(190,1983) /gb=NM_129572
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Pba.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Pth.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Ptp.6284
N036H06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815078
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477

Domain Architecture

Ank PF00023 AT3G55980.1
DomainStartEndBit scoreE-value
Ank7210516.10.14
Ank10714219.50.013
zf-CCCH25227726.97.3e-05
zf-CCCH2873091.60.86

Sequences