Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT3G61740.2

Identification

Species:
Arabidopsis thaliana
Locus
AT3G61740
Gene model
AT3G61740.2
Description
similar to PHD finger protein-related / SET domain-containing protein (TX4) [Arabidopsis thaliana] (TAIR:AT4G27910.1); similar to SDG29 (SET DOMAIN GROUP 29), DNA binding [Arabidopsis thaliana] (TAIR:AT5G53430.1); similar to unnamed protein product [Viti
Family
PHD
3D structure (top 5)
3H6L 3BO5 1H3I 2R3A 2RFI
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G61740.2 Score: 1
AT3G61740.1 Score: 0.979

Carica papaya

evm.TU.supercontig_96.10 Score: 1

Populus trichocarpa

244954 Score: 1

Arabidopsis thaliana

AT3G61740.2 Score: 1
AT3G61740.1 Score: 0.98

Selaginella moellendorffii

164635 Score: 1

Arabidopsis thaliana

AT3G61740.2 Score: 1
AT3G61740.1 Score: 0.987

Expression data

Expressed Sequence Tags

At.30748
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS12ZA11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830662
At.46146
Arabidopsis thaliana At5g53430 mRNA for putative trithorax 5 (TX5), complete cds, clone: RAFL16-77-F07 /cds=p(478,3609) /gb=AK117221
At.47229
Arabidopsis thaliana mRNA for trithorax 3, complete cds, clone: RAFL14-03-C15 /cds=p(426,3482) /gb=AK227351
At.49401
Arabidopsis thaliana unknown protein (AT3G62500) mRNA, complete cds /cds=p(1,1125) /gb=NM_116115
Hv.28779
HDP28P14T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP28P14, mRNA sequence /clone=HDP28P14 /gb=EX593775
Pba.1904
WS0232.B21_L14 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_L14 3', mRNA sequence /clone=WS0232_L14 /clone_end=3' /gb=CV239535
Pth.12969
F033P65.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F033P65 3', mRNA sequence /clone=F033P65 /clone_end=3' /gb=CK090938
Pth.13471
WS0162.B21_F01 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_F01 3', mRNA sequence /clone=WS0162_F01 /clone_end=3' /gb=CV225758
Sbi.18943
POL1_8_F09.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_8_F09_A002 5', mRNA sequence /clone=POL1_8_F09_A002 /clone_end=5' /gb=CF482729 /gi=34511598
Vvi.19260
VVI069F03_593334 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI069F03 5, mRNA sequence /clone=VVI069F03 /clone_end=5' /gb=DT021747
Vvi.21312
WIN1115.C21_N03 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1115_N03 3', mRNA sequence /clone=WIN1115_N03 /clone_end=3' /gb=EC982390

Domain Architecture

PWWP PF00855 AT3G61740.2
DomainStartEndBit scoreE-value
PWWP186270408.6e-09
PHD36441839.61.1e-08
PHD54859740.17.7e-09
SET833964166.66.6e-47

Sequences