Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT4G00990.1

Identification

Species:
Arabidopsis thaliana
Locus
AT4G00990
Gene model
AT4G00990.1
Description
transcription factor jumonji (jmjC) domain-containing protein
Family
Jumonji

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490470 Score: 1

Carica papaya

evm.TU.supercontig_96.28 Score: 1

Coccomyxa sp. C-169

77471 Score: 1

Populus trichocarpa

775697 Score: 1

Sorghum bicolor

4885362 Score: 1

Vitis vinifera

GSVIVP00008625001 Score: 1

Expression data

Expressed Sequence Tags

At.18334
Arabidopsis thaliana IBM1 (INCREASE IN BONSAI METHYLATION 1); histone demethylase(H3-K9 specific) / transcription factor (IBM1) mRNA, complete cds /cds=p(1,3084) /gb=NM_111640
At.3531
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT4G00990) mRNA, complete cds /cds=p(92,2614) /gb=NM_116327
Hv.4909
BJ484812 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56d17 3', mRNA sequence /clone=bah56d17 /clone_end=3' /gb=BJ484812
Mtr.22381
METAL93TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475949
Os.6505
Oryza sativa Japonica Group cDNA clone:001-023-A12, full insert sequence /gb=AK059145
Os.79778
Oryza sativa (japonica cultivar-group) Os02g0109400 (Os02g0109400) mRNA, complete cds /cds=p(1,2994) /gb=NM_001052179
Ppa.19248
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_118936) mRNA, partial cds /cds=p(1,1998) /gb=XM_001757080
Ppa.20723
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_154856) mRNA, complete cds /cds=p(1,2082) /gb=XM_001785065
Vvi.11982
CAP0006_IVR_F05 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0006_IVR_F05 3', mRNA sequence /clone=CAP0006_IVR_F05 /clone_end=3' /gb=CF519154
Vvi.2997
CA12EI302IF_E11 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI302IF_E11 5', mRNA sequence /clone=CA12EI302IF_E11 /clone_end=5' /gb=CA816066
Vvi.4830
CAB2SG0004_IaR_D10 Cabernet Sauvignon Berry - CAB2SG Vitis vinifera cDNA clone CAB2SG0004_IaR_D10 3', mRNA sequence /clone=CAB2SG0004_IaR_D10 /clone_end=3' /gb=CB348379

Domain Architecture

JmjC PF02373 AT4G00990.1
DomainStartEndBit scoreE-value
JmjC66278145.81.6e-10

Sequences