Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT4G20400.2

Identification

Species:
Arabidopsis thaliana
Locus
AT4G20400
Gene model
AT4G20400.2
Description
transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.924

Cyanidioschyzon merolae

CMT461C Score: 1

Arabidopsis thaliana

AT4G20400.2 Score: 1
AT4G20400.1 Score: 0.982

Carica papaya

evm.TU.supercontig_192.21 Score: 1

Micromonas pusilla CCMP1545

19881 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.923

Micromonas sp. RCC299

56462 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.922

Ostreococcus tauri

34223 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.927

Physcomitrella patens

136290 Score: 1

Arabidopsis thaliana

AT4G20400.1 Score: 1
AT4G20400.2 Score: 0.91

Arabidopsis thaliana

AT4G20400.2 Score: 1
AT4G20400.1 Score: 0.979

Vitis vinifera

GSVIVP00035196001 Score: 1

Expression data

Expressed Sequence Tags

At.26858
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G08620) mRNA, complete cds /cds=p(1,3552) /gb=NM_100735
At.27326
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT1G30810) mRNA, complete cds /cds=p(323,2686) /gb=NM_102818
At.43482
Arabidopsis thaliana transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (AT4G20400) mRNA, complete cds /cds=p(201,3065) /gb=NM_118159
At.53035
Arabidopsis thaliana MEE27 (maternal effect embryo arrest 27); transcription factor (MEE27) mRNA, complete cds /cds=p(1,2421) /gb=NM_129041
Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Pth.16132
F057P19.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F057P19 3', mRNA sequence /clone=F057P19 /clone_end=3' /gb=CK091187
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 AT4G20400.2
DomainStartEndBit scoreE-value
JmjN74448.52.4e-11
JmjC239355251.12.5e-72
zf-C5HC2462515944.6e-25
FYRN67772683.66.2e-22
FYRC729824129.78.5e-36

Sequences