Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT4G36020.1

Identification

Species:
Arabidopsis thaliana
Locus
AT4G36020
Gene model
AT4G36020.1
Gene names and synonyms
CSDP1 iHOP
Description
CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding
Family
CSD
3D structure (top 5)
1MJC 1H95 3CAM 1C9O 2K5N
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491032 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Physcomitrella patens

183211 Score: 1
47533 Score: 1

Arabidopsis thaliana

AT2G21060.1 Score: 1
AT4G36020.1 Score: 1

Populus trichocarpa

412941 Score: 1

Sorghum bicolor

5003468 Score: 1

Zea mays

GRMZM2G090076_P01 Score: 1
GRMZM2G179385_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19464
Arabidopsis thaliana cold-shock DNA-binding family protein (AT2G17870) mRNA, complete cds /cds=p(50,955) /gb=NM_127341
At.23073
Arabidopsis thaliana mRNA for glycine-rich protein, complete cds, clone: RAFL07-95-D17 /cds=p(60,959) /gb=AK226815

Domain Architecture

CSD PF00313 AT4G36020.1
DomainStartEndBit scoreE-value
CSD1077129.69.2e-36
zf-CCHC100117308.4e-06
zf-CCHC13214937.54.6e-08
zf-CCHC16418133.95.9e-07
zf-CCHC19821534.83.2e-07
zf-CCHC230247322.1e-06
zf-CCHC25327031.82.5e-06
zf-CCHC280297361.4e-07

Sequences