Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT4G38680.1

Identification

Species:
Arabidopsis thaliana
Locus
AT4G38680
Gene model
AT4G38680.1
Gene names and synonyms
CSDP2 iHOP
GRP2 iHOP
Description
CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding
Family
CSD
3D structure (top 5)
1H95 1MJC 1C9O 2YTY 2BH8
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

912317 Score: 1

Arabidopsis thaliana

AT2G21060.1 Score: 1
AT4G38680.1 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
At.24348
glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] /cds=p(56,667) /gb=S47408
At.73207
Arabidopsis thaliana CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding (CSDP2/GRP2) mRNA, complete cds /cds=p(332,943) /gb=NM_120029
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Os.54054
Oryza sativa Japonica Group cDNA, clone: J100044F18, full insert sequence /gb=AK243227
Ppa.15638
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180264) mRNA, complete cds /cds=p(263,826) /gb=XM_001760093
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837

Domain Architecture

CSD PF00313 AT4G38680.1
DomainStartEndBit scoreE-value
CSD10771291.4e-35
zf-CCHC12914636.68.7e-08
zf-CCHC18320035.22.4e-07

Sequences