Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT4G38900.1

Identification

Species:
Arabidopsis thaliana
Locus
AT4G38900
Gene model
AT4G38900.1
Description
bZIP protein
Family
bZIP
3D structure (top 5)
1DEQ 3GHG 1I84
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

856577 Score: 1

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.995

Carica papaya

evm.TU.supercontig_150.7 Score: 1

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.997

Oryza sativa subsp. japonica

LOC_Os08g43090.1 Score: 1

Populus trichocarpa

556549 Score: 1

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.996

Sorghum bicolor

5044027 Score: 1

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.997

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.996

Vitis vinifera

GSVIVP00035977001 Score: 1

Arabidopsis thaliana

AT4G38900.2 Score: 1
AT4G38900.3 Score: 1
AT4G38900.1 Score: 0.997

Zea mays

GRMZM2G175280_P02 Score: 1

Expression data

Expressed Sequence Tags

At.22873
Arabidopsis thaliana bZIP family transcription factor (AT2G21230) mRNA, complete cds /cds=p(141,1718) /gb=NM_001124883
At.2835
Arabidopsis thaliana bZIP protein (AT4G38900) mRNA, complete cds /cds=p(354,1997) /gb=NM_179189
At.503
Arabidopsis thaliana bZIP transcription factor family protein (AT2G40620) mRNA, complete cds /cds=p(107,1210) /gb=NM_129624
Hv.30815
BJ462913 K. Sato unpublished cDNA library, cv. Haruna Nijo germination shoots Hordeum vulgare subsp. vulgare cDNA clone bags24o09 5', mRNA sequence /clone=bags24o09 /clone_end=5' /gb=BJ462913
Mtr.2023
Medicago truncatula clone MTYFL_FM_FN_FO1G-O-20 unknown mRNA /cds=p(140,862) /gb=BT053041
Os.19640
Oryza sativa Japonica Group cDNA clone:J013048G15, full insert sequence /gb=AK065995
Os.54213
Oryza sativa Japonica Group cDNA clone:J033097I23, full insert sequence /gb=AK102562
Pba.1560
WS02514.B21.1_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_O23 3', mRNA sequence /clone=WS02514_O23 /clone_end=3' /gb=CV242392
Pba.4670
WS01228.B21_D10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_D10 3', mRNA sequence /clone=WS01228_D10 /clone_end=3' /gb=DT476077
Pba.9145
WS02520.BR_H11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02520_H11 5', mRNA sequence /clone=WS02520_H11 /clone_end=5' /gb=DT477613
Ppa.14974
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_201072) mRNA, complete cds /cds=p(1,1050) /gb=XM_001785687
Ppa.19317
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_45185) mRNA, partial cds /cds=p(1,798) /gb=XM_001755929
Ppa.8082
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_176895) mRNA, complete cds /cds=p(1,1002) /gb=XM_001755930
Pth.4670
Populus trichocarpa clone WS0128_N17 unknown mRNA /cds=p(111,1133) /gb=EF148222
Pth.9145
WS02514.B21.1_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_O23 3', mRNA sequence /clone=WS02514_O23 /clone_end=3' /gb=CV242392
Ptp.954
C028P47.5pR Populus strain T89 leaves Populus tremula x Populus tremuloides cDNA clone C028P47 5', mRNA sequence /clone=C028P47 /clone_end=5' /gb=CK100390
Sbi.19770
RTHAIR1_1_D03.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_1_D03_A002 5', mRNA sequence /clone=RTHAIR1_1_D03_A002 /clone_end=5' /gb=EH406629

Domain Architecture

bZIP_2 PF07716 AT4G38900.1
DomainStartEndBit scoreE-value
bZIP_239345222.80.0013

Sequences