Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G04940.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G04940
Gene model
AT5G04940.1
Gene names and synonyms
SUVH1 iHOP
Description
SUVH1 (SU(VAR)3-9 HOMOLOG 1)
Family
SET
3D structure (top 5)
2F69 2PB7 2R3A 1ML9 3F9X
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487281 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g38900.1 Score: 1

Populus trichocarpa

590678 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Sorghum bicolor

4873608 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Arabidopsis thaliana

AT5G04940.1 Score: 1
AT5G04940.2 Score: 1

Zea mays

GRMZM2G060478_P01 Score: 1

Expression data

Expressed Sequence Tags

At.11687
Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) (SUVH3) mRNA, complete cds /cds=p(212,2221) /gb=NM_105968
At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Mtr.13736
EST648070 KV3 Medicago truncatula cDNA clone KV3-49K23, mRNA sequence /clone=KV3-49K23 /gb=CB891101
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 AT5G04940.1
DomainStartEndBit scoreE-value
YDG_SRA206361224.81.9e-64
Pre-SET388487159.58.7e-45
SET4896451806.3e-51

Sequences