Gene model: AT5G05610.1

Species: Arabidopsis thaliana Locus AT5G05610 Gene model AT5G05610.1 Description PHD finger family protein Family Alfin-like 3D structure (top 5) 1WEP 1WE9 2RI7 1WEU 2JMI
	PDB entry: 1WEP 1WE9 2RI7 1WEU 2JMI 1WEW 1WEE 2K16 2KGG 1WEV 1WEM 1WEN 2E6S 2VNF 2G6Q 3C6W 2E6R 2VPB 1X4I 1XWH 2YT5 1FP0 1MM2 2YQL 1F62 2PUY

• KEGG
• TAIR

• GabiPD
• PhosPhAT
• ProMEX

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487363 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Carica papaya

evm.TU.supercontig_19.165 Score: 1

Coccomyxa sp. C-169

40531 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT3G11200.1 Score: 1
AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g12910.1 Score: 1

Populus trichocarpa

656257 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Sorghum bicolor

4999458 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Selaginella moellendorffii

99900 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Vitis vinifera

GSVIVP00038887001 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

• AthaMap - TFBS in the promoter of this gene
• eFP Browser - Uni Toronto - Natural Variation
• MPSS data
• eFP Browser - Uni Toronto - Abiotic stresses
• eFP Browser - Uni Toronto - Developmental processes
• NCBI EST Profile Viewer (UniGene: At.17411)
• NCBI EST Profile Viewer (UniGene: At.27212)
• NCBI EST Profile Viewer (UniGene: At.43821)
• NCBI EST Profile Viewer (UniGene: Hv.10724)
• NCBI EST Profile Viewer (UniGene: Mtr.10914)
• NCBI EST Profile Viewer (UniGene: Mtr.2273)
• NCBI EST Profile Viewer (UniGene: Mtr.2282)
• NCBI EST Profile Viewer (UniGene: Mtr.7514)
• NCBI EST Profile Viewer (UniGene: Os.59070)
• NCBI EST Profile Viewer (UniGene: Os.9944)
• NCBI EST Profile Viewer (UniGene: Pba.10516)
• NCBI EST Profile Viewer (UniGene: Pba.3342)
• NCBI EST Profile Viewer (UniGene: Ppa.4847)
• NCBI EST Profile Viewer (UniGene: Pth.10516)
• NCBI EST Profile Viewer (UniGene: Pth.15349)
• NCBI EST Profile Viewer (UniGene: Pth.16891)
• NCBI EST Profile Viewer (UniGene: Pth.3342)
• NCBI EST Profile Viewer (UniGene: Sbi.17390)
• NCBI EST Profile Viewer (UniGene: Vvi.5438)
• NCBI EST Profile Viewer (UniGene: Vvi.7588)

At.17411

Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX822406

At.27212

Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147

At.43821

Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643

Hv.10724

Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191

Mtr.10914

Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954

Mtr.2273

EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211

Mtr.2282

EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892

Mtr.7514

Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814

Os.59070

Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788

Os.9944

Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657

Pba.10516

WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199

Pba.3342

WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454

Ppa.4847

Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826

Pth.10516

WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299

Pth.15349

WS02510.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N18 3', mRNA sequence /clone=WS02510_N18 /clone_end=3' /gb=CV240968

Pth.16891

Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076

Pth.3342

Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581

Sbi.17390

GABR1_1_E04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_E04_A002 5', mRNA sequence /clone=GABR1_1_E04_A002 /clone_end=5' /gb=CX612304 /gi=57811024

Vvi.5438

WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152

Vvi.7588

WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

protein sequence
transcript sequence