Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G05610.2

Identification

Species:
Arabidopsis thaliana
Locus
AT5G05610
Gene model
AT5G05610.2
Description
PHD finger family protein
Family
Alfin-like
3D structure (top 5)
1WEP 1WE9 2RI7 1WEU 2JMI
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487363 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Carica papaya

evm.TU.supercontig_19.165 Score: 1

Coccomyxa sp. C-169

40531 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT3G11200.1 Score: 1
AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g12910.1 Score: 1

Populus trichocarpa

656257 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Sorghum bicolor

4999458 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Selaginella moellendorffii

99900 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Vitis vinifera

GSVIVP00038887001 Score: 1

Arabidopsis thaliana

AT5G05610.1 Score: 1
AT5G05610.2 Score: 1

Expression data

Expressed Sequence Tags

At.17411
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZA09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX822406
At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.43821
Arabidopsis thaliana PHD finger family protein (AT5G05610) mRNA, complete cds /cds=p(163,888) /gb=NM_120643
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.2273
EST1225172 MTY Medicago truncatula cDNA clone MTYAE43, mRNA sequence /clone=MTYAE43 /gb=DW016211
Mtr.2282
EST1224853 MTY Medicago truncatula cDNA clone MTYAA88, mRNA sequence /clone=MTYAA88 /gb=DW015892
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.59070
Oryza sativa Japonica Group cDNA, clone: J090069O18, full insert sequence /gb=AK288788
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.10516
WS01117.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 5', mRNA sequence /clone=WS01117_L13 /clone_end=5' /gb=DT494199
Pba.3342
WS01226.BR.1_M06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_M06 5', mRNA sequence /clone=WS01226_M06 /clone_end=5' /gb=DT472454
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.10516
WS01117.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_L13 3', mRNA sequence /clone=WS01117_L13 /clone_end=3' /gb=CV247299
Pth.15349
WS02510.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N18 3', mRNA sequence /clone=WS02510_N18 /clone_end=3' /gb=CV240968
Pth.16891
Populus trichocarpa clone WS0111_P17 unknown mRNA /cds=p(71,784) /gb=EF145076
Pth.3342
Populus trichocarpa clone WS0123_J18 unknown mRNA /cds=p(129,845) /gb=EF147581
Sbi.17390
GABR1_1_E04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1_E04_A002 5', mRNA sequence /clone=GABR1_1_E04_A002 /clone_end=5' /gb=CX612304 /gi=57811024
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152
Vvi.7588
WIN027.TB24.1_F24 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_F24 3', mRNA sequence /clone=WIN027_F24 /clone_end=3' /gb=EC924987

Domain Architecture

PHD PF00628 AT5G05610.2
DomainStartEndBit scoreE-value
PHD18723747.64.4e-11
Alfin-like188234122.32.3e-36

Sequences