Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G06550.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G06550
Gene model
AT5G06550.1
Description
Identical to F-box protein At5g06550 [Arabidopsis Thaliana] (GB:Q67XX3;GB:Q9FG15); similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78280.1); similar to hypothetical protein [Vitis vinifera] (GB:CA
Family
Jumonji
3D structure (top 5)
1VRB 2YU1 3D8C 2W2I 2OX0
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487465 Score: 1

Chlorella sp. NC64A

137703 Score: 1

Carica papaya

evm.TU.supercontig_222.12 Score: 1

Coccomyxa sp. C-169

17039 Score: 1

Ostreococcus lucimarinus

12370 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g36450.1 Score: 1

Ostreococcus tauri

16032 Score: 1

Physcomitrella patens

139383 Score: 1

Sorghum bicolor

5056683 Score: 1

Selaginella moellendorffii

78122 Score: 1

Vitis vinifera

GSVIVP00027131001 Score: 1

Zea mays

GRMZM2G078198_P01 Score: 1
GRMZM2G078198_P02 Score: 1

Chlamydomonas reinhardtii

188711 Score: 1

Expression data

Expressed Sequence Tags

At.49785
Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-23-P18 /cds=p(8,1516) /gb=AK176695
Hv.7036
HDP33M01w HDP Hordeum vulgare subsp. vulgare cDNA clone HDP33M01, mRNA sequence /clone=HDP33M01 /gb=EX586682
Os.35279
Oryza sativa Japonica Group cDNA clone:J013145N15, full insert sequence /gb=AK068220
Ppa.19046
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_139383) mRNA, complete cds /cds=p(1,1533) /gb=XM_001772885

Domain Architecture

F-box PF00646 AT5G06550.1
DomainStartEndBit scoreE-value
F-box8112821.80.0025
JmjC31142227.22.7e-06

Sequences