Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G06770.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G06770
Gene model
AT5G06770.1
Description
KH domain-containing protein / zinc finger (CCCH type) family protein
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 2D9M 2RPP
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

325295 Score: 1

Carica papaya

evm.TU.supercontig_235.4 Score: 1

Arabidopsis thaliana

AT3G12130.1 Score: 1
AT5G06770.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10080.1 Score: 1
LOC_Os06g41384.1 Score: 1
LOC_Os06g41384.2 Score: 1

Ostreococcus tauri

37617 Score: 1

Populus trichocarpa

416242 Score: 1

Sorghum bicolor

4889482 Score: 1
5054839 Score: 1

Arabidopsis thaliana

AT3G12130.1 Score: 1
AT5G06770.1 Score: 1

Zea mays

GRMZM2G071034_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27694
Arabidopsis thaliana KH domain-containing protein / zinc finger (CCCH type) family protein (AT3G12130) mRNA, complete cds /cds=p(191,937) /gb=NM_112048
At.43568
Arabidopsis thaliana clone 27460 mRNA, complete sequence /cds=p(168,890) /gb=AY086759
Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Sbi.1446
OX1_53_C02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_53_C02_A002 3', mRNA sequence /clone=OX1_53_C02_A002 /clone_end=3' /gb=CN136740 /gi=45969804
Vvi.15871
WIN0813.C21_O23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_O23 3', mRNA sequence /clone=WIN0813_O23 /clone_end=3' /gb=EC962242

Domain Architecture

zf-CCCH PF00642 AT5G06770.1
DomainStartEndBit scoreE-value
zf-CCCH376325.40.00021
KH_111517754.24.5e-13
zf-CCCH206231461.3e-10

Sequences