Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G06960.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G06960
Gene model
AT5G06960.1
Gene names and synonyms
OBF5 iHOP
TGA5 iHOP
Description
OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / transcription factor
Family
bZIP
3D structure (top 5)
1HJB 1DH3 1T2K 2DGC 1GU4
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487514 Score: 1

Arabidopsis thaliana

AT5G06960.1 Score: 1
AT5G06960.2 Score: 1

Expression data

Expressed Sequence Tags

At.10454
Arabidopsis thaliana bZIP family transcription factor (AT1G08320) mRNA, complete cds /cds=p(271,1716) /gb=NM_001035922
At.16522
Arabidopsis thaliana bZIP family transcription factor (AT1G77920) mRNA, complete cds /cds=p(464,1570) /gb=NM_106441
At.23884
Arabidopsis thaliana At5g06950 mRNA for putative bZip transcription factor AtbZip20/tga2, complete cds, clone: RAFL17-34-M19 /cds=p(278,1270) /gb=AK117686
At.24071
Arabidopsis thaliana TGA4 (TGACG MOTIF-BINDING FACTOR 4); DNA binding / calmodulin binding / transcription factor (TGA4) mRNA, complete cds /cds=p(256,1350) /gb=NM_121041
At.35500
Arabidopsis thaliana PAN (PERIANTHIA); DNA binding / transcription factor (PAN) mRNA, complete cds /cds=p(241,1599) /gb=NM_105536
At.5408
Arabidopsis thaliana OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / transcription factor (OBF5) mRNA, complete cds /cds=p(348,1340) /gb=NM_120778
At.70207
Arabidopsis thaliana TGA6 (TGA1a-related gene 6); DNA binding / transcription factor (TGA6) mRNA, complete cds /cds=p(422,1396) /gb=NM_202564
At.8517
Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP65 gene) /cds=p(389,1642) /gb=AJ314787
Hv.6102
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf125e16, mRNA sequence /gb=AK251460
Os.10220
Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds /cds=p(506,1510) /gb=AB051295
Os.15238
Oryza sativa Japonica Group cDNA, clone: J075183E21, full insert sequence /cds=p(401,1402) /gb=AK242257
Os.23469
Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence /cds=p(295,1608) /gb=AK109520
Os.42388
Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence /cds=p(130,1749) /gb=AK101338
Os.439
Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence /cds=p(429,1418) /gb=AK242743
Os.49126
Oryza sativa Japonica Group cDNA clone:J023013G15, full insert sequence /cds=p(379,1833) /gb=AK069411
Os.54058
Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence /cds=p(458,1927) /gb=AK101620
Os.56267
Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence /cds=p(156,1313) /gb=AK109719
Ppa.11800
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_71017) mRNA, complete cds /cds=p(1,987) /gb=XM_001757906
Ppa.13187
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_188998) mRNA, complete cds /cds=p(161,1180) /gb=XM_001770508
Ppa.23006
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147335) mRNA, partial cds /cds=p(1,873) /gb=XM_001779404

Domain Architecture

bZIP_2 PF07716 AT5G06960.1
DomainStartEndBit scoreE-value
bZIP_2429219.40.0042

Sequences