Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G11260.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G11260
Gene model
AT5G11260.1
Gene names and synonyms
HY5 iHOP
TED 5 iHOP
Description
HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor
Family
bZIP
3D structure (top 5)
1HJB 1GU4 1CI6 1T2K 1FOS
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

909087 Score: 1

Carica papaya

evm.TU.supercontig_115.10 Score: 1

Ostreococcus lucimarinus

29020 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g39960.1 Score: 1

Ostreococcus tauri

30391 Score: 1

Physcomitrella patens

213225 Score: 1

Populus trichocarpa

717128 Score: 1

Sorghum bicolor

4977953 Score: 1

Vitis vinifera

GSVIVP00032620001 Score: 1

Zea mays

GRMZM2G058172_P01 Score: 1
GRMZM2G137046_P01 Score: 1

Expression data

Expressed Sequence Tags

At.20257
Arabidopsis thaliana HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor (HY5) mRNA, complete cds /cds=p(193,699) /gb=NM_121164
Hv.6541
HI14N10r HI Hordeum vulgare subsp. vulgare cDNA clone HI14N10 5-PRIME, mRNA sequence /clone=HI14N10 /clone_end=5' /gb=BU999546
Os.91160
CT856198 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone OSIGCSA020J11, mRNA sequence /clone=OSIGCSA020J11 /gb=CT856198
Ppa.20397
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_213225) mRNA, complete cds /cds=p(33,425) /gb=XM_001766772
Vvi.3440
WIN115.C21_K07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN115_K07 3', mRNA sequence /clone=WIN115_K07 /clone_end=3' /gb=EC994196

Domain Architecture

bZIP_1 PF00170 AT5G11260.1
DomainStartEndBit scoreE-value
bZIP_18614955.91.4e-13
bZIP_286140422.2e-09

Sequences