Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G13730.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G13730
Gene model
AT5G13730.1
Gene names and synonyms
SIG4 iHOP
SIGD iHOP
Description
SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 1L9Z 2A6H
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

909325 Score: 1

Chlorella sp. NC64A

35462 Score: 1

Carica papaya

evm.TU.supercontig_125.40 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Populus trichocarpa

202953 Score: 1

Selaginella moellendorffii

266972 Score: 1

Vitis vinifera

GSVIVP00028718001 Score: 1

Expression data

Expressed Sequence Tags

At.49018
Arabidopsis thaliana sigma-like factor (MSH12.20) mRNA, complete cds /cds=p(89,892) /gb=AY059907

Domain Architecture

Sigma70_r2 PF04542 AT5G13730.1
DomainStartEndBit scoreE-value
Sigma70_r218325391.92.1e-24
Sigma70_r325733988.62e-23
Sigma70_r4351404745.1e-19

Sequences