Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G13960.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G13960
Gene model
AT5G13960.1
Gene names and synonyms
KYP iHOP
SUVH4 iHOP
Description
SUVH4 (SU(VAR)3-9 HOMOLOG 4)
Family
SET
3D structure (top 5)
2PB7 2R3A 1ML9 3F9X 2RFI
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488222 Score: 1

Coccomyxa sp. C-169

59484 Score: 1

Micromonas pusilla CCMP1545

62078 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g70220.1 Score: 1

Physcomitrella patens

30594 Score: 1

Populus trichocarpa

409038 Score: 1

Sorghum bicolor

4881238 Score: 1

Selaginella moellendorffii

79965 Score: 1

Vitis vinifera

GSVIVP00006194001 Score: 1

Zea mays

GRMZM2G031407_P01 Score: 1

Expression data

Expressed Sequence Tags

At.8330
Arabidopsis thaliana At5g13960 mRNA sequence /gb=AY080822
Os.31816
Oryza sativa Japonica Group cDNA clone:002-114-E02, full insert sequence /gb=AK106700
Ppa.21390
Physcomitrella patens subsp. patens histone methyltransferase Su3-9 group (SDG1519) mRNA, complete cds /cds=p(1,1638) /gb=XM_001775288
Vvi.21434
WIN1129.C21_B16 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1129_B16 3', mRNA sequence /clone=WIN1129_B16 /clone_end=3' /gb=EC986907

Domain Architecture

YDG_SRA PF02182 AT5G13960.1
DomainStartEndBit scoreE-value
YDG_SRA144306187.43.6e-53
Pre-SET3354381552e-43
SET4406011813e-51

Sequences