Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G14260.3

Identification

Species:
Arabidopsis thaliana
Locus
AT5G14260
Gene model
AT5G14260.3
Description
SET domain-containing protein
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488263 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Carica papaya

evm.TU.supercontig_130.11 Score: 1

Coccomyxa sp. C-169

83958 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g13460.1 Score: 1

Physcomitrella patens

141673 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Populus trichocarpa

585260 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Sorghum bicolor

5036310 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Selaginella moellendorffii

110000 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Vitis vinifera

GSVIVP00020556001 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Zea mays

GRMZM2G047695_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28593
Arabidopsis thaliana SET domain-containing protein (AT5G14260) mRNA, complete cds /cds=p(149,1693) /gb=NM_180707
Hv.5742
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf3a05, mRNA sequence /gb=AK253114
Mtr.12292
NF101G05PL1F1038 Phosphate starved leaf Medicago truncatula cDNA clone NF101G05PL 5', mRNA sequence /clone=NF101G05PL /clone_end=5' /gb=BG457387
Os.6384
Oryza sativa Japonica Group cDNA clone:J013134J07, full insert sequence /gb=AK068145
Pba.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032
Ppa.10744
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_209618) mRNA, complete cds /cds=p(75,1358) /gb=XM_001762516
Ppa.1495
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_141673) mRNA, complete cds /cds=p(1,1572) /gb=XM_001774713
Pth.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032

Domain Architecture

SET PF00856 AT5G14260.3
DomainStartEndBit scoreE-value
SET81336139.11.2e-38
Rubis-subs-bind359483163.84.7e-46

Sequences