Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G16540.2

Identification

Species:
Arabidopsis thaliana
Locus
AT5G16540
Gene model
AT5G16540.2
Gene names and synonyms
ZFN3 iHOP
Description
ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding
Family
C3H
3D structure (top 5)
1M9O 2E5S 2RPP 2CQE 2D9N
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Selaginella moellendorffii

45667 Score: 1

Arabidopsis thaliana

AT5G16540.1 Score: 1
AT5G16540.2 Score: 0.958
AT5G16540.3 Score: 0.914

Expression data

Expressed Sequence Tags

At.21711
Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding (ZFN3) mRNA, complete cds /cds=p(375,1439) /gb=NM_203061
At.23706
Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding (ZFN1) mRNA, complete cds /cds=p(274,1467) /gb=NM_111151
Mtr.10625
EST1225273 MTY Medicago truncatula cDNA clone MTYAF64, mRNA sequence /clone=MTYAF64 /gb=DW016312
Os.12914
Oryza sativa (japonica cultivar-group) Os11g0472000 (Os11g0472000) mRNA, partial cds /cds=p(291,1535) /gb=NM_001074410
Os.14912
Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence /cds=p(183,1547) /gb=AK111511
Os.19086
Oryza sativa Japonica Group cDNA clone:002-110-B05, full insert sequence /gb=AK112102
Vvi.9025
VV_PEd0014f11.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240837

Domain Architecture

zf-CCCH PF00642 AT5G16540.2
DomainStartEndBit scoreE-value
zf-CCCH436933.86.3e-07
zf-CCCH88114422.1e-09
zf-CCCH13416043.19.8e-10
zf-CCCH24427044.73.3e-10
zf-CCCH28330944.73.2e-10

Sequences