Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G17240.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G17240
Gene model
AT5G17240.1
Gene names and synonyms
SDG40 iHOP
Description
SDG40 (SET DOMAIN GROUP 40)
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488588 Score: 1

Chlorella sp. NC64A

137077 Score: 1

Carica papaya

evm.TU.supercontig_178.39 Score: 1

Micromonas pusilla CCMP1545

60905 Score: 1

Micromonas sp. RCC299

104541 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g28840.1 Score: 1

Physcomitrella patens

182780 Score: 1

Populus trichocarpa

198679 Score: 1

Sorghum bicolor

4748908 Score: 1

Selaginella moellendorffii

429412 Score: 1

Vitis vinifera

GSVIVP00023493001 Score: 1

Zea mays

GRMZM2G092131_P01 Score: 1

Expression data

Expressed Sequence Tags

At.31578
Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-58-G06 /cds=p(3,1478) /gb=AK175921
Hv.9245
HT09L04r HT Hordeum vulgare subsp. vulgare cDNA clone HT09L04 5-PRIME, mRNA sequence /clone=HT09L04 /clone_end=5' /gb=CA013860
Pth.13808
WS0254.B21_F22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0254_F22 3', mRNA sequence /clone=WS0254_F22 /clone_end=3' /gb=CV244333
Vvi.10852
WIN028.TB24.1_L06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN028_L06 3', mRNA sequence /clone=WIN028_L06 /clone_end=3' /gb=EC925388

Domain Architecture

SET PF00856 AT5G17240.1
DomainStartEndBit scoreE-value
SET28284137.34.4e-38

Sequences