Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G24120.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G24120
Gene model
AT5G24120.1
Gene names and synonyms
SIG5 iHOP
SIGE iHOP
Description
SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 1L9Z 2A6H
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

489269 Score: 1

Carica papaya

evm.TU.supercontig_3.55 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g50930.1 Score: 1

Physcomitrella patens

230140 Score: 1

Populus trichocarpa

591382 Score: 1

Sorghum bicolor

5010228 Score: 1

Selaginella moellendorffii

53596 Score: 1

Vitis vinifera

GSVIVP00006496001 Score: 1

Zea mays

GRMZM2G077436_P01 Score: 1

Expression data

Expressed Sequence Tags

At.5425
Arabidopsis thaliana SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor (SIGE) mRNA, complete cds /cds=p(108,1661) /gb=NM_122317
Hv.13889
BJ484953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah56o16 3', mRNA sequence /clone=bah56o16 /clone_end=3' /gb=BJ484953
Os.57417
Oryza sativa Japonica Group cDNA clone:001-201-C12, full insert sequence /gb=AK105697

Domain Architecture

Sigma70_r2 PF04542 AT5G24120.1
DomainStartEndBit scoreE-value
Sigma70_r228335651.43.1e-12
Sigma70_r335944075.22.1e-19
Sigma70_r445250578.91.7e-20

Sequences