Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G24470.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G24470
Gene model
AT5G24470.1
Gene names and synonyms
APRR5 iHOP
PRR5 iHOP
Description
APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator
Family
Pseudo ARR-B
3D structure (top 5)
3DZD 1NY5 1W25 2JBA 2AYX
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

910487 Score: 1

Carica papaya

evm.TU.supercontig_3.156 Score: 1

Micromonas pusilla CCMP1545

48139 Score: 1

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g05930.1 Score: 1
LOC_Os11g05930.2 Score: 0.901
LOC_Os11g05930.3 Score: 0.901

Ostreococcus tauri

23022 Score: 1

Populus trichocarpa

422771 Score: 1

Sorghum bicolor

5056377 Score: 1

Vitis vinifera

GSVIVP00037169001 Score: 1

Zea mays

GRMZM2G179024_P01 Score: 1

Chlamydomonas reinhardtii

166515 Score: 1

Arabidopsis thaliana

AT2G46790.1 Score: 1
AT5G24470.1 Score: 1

Expression data

Expressed Sequence Tags

At.1676
Arabidopsis thaliana APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator (APRR3) mRNA, complete cds /cds=p(397,1884) /gb=NM_125403
At.21641
Arabidopsis thaliana APRR5 (PSEUDO-RESPONSE REGULATOR 5); transcription regulator (APRR5) mRNA, complete cds /cds=p(1,2004) /gb=NM_122355
Mtr.19448
MTYCY38TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256565
Os.12795
Oryza sativa Japonica Group cDNA clone:J013001E13, full insert sequence /gb=AK120059
Os.58539
Oryza sativa Japonica Group cDNA clone:J023077E22, full insert sequence /gb=AK121136
Os.59215
Oryza sativa Japonica Group cDNA clone:J013051N02, full insert sequence /gb=AK066112
Os.80771
Oryza sativa Japonica Group cDNA clone:J013102G21, full insert sequence /cds=p(267,2138) /gb=AK067314
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Sbi.10157
PIC1_53_A05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM325806
Vvi.23600
CA12EI204IIF_C02 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI204IIF_C02 5', mRNA sequence /clone=CA12EI204IIF_C02 /clone_end=5' /gb=CA815595

Domain Architecture

Response_reg PF00072 AT5G24470.1
DomainStartEndBit scoreE-value
Response_reg15927593.47e-25
CCT61866282.71.2e-21

Sequences