Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G43990.2

Identification

Species:
Arabidopsis thaliana
Locus
AT5G43990
Gene model
AT5G43990.2
Gene names and synonyms
SUVR2 iHOP
Description
SUVR2; histone-lysine N-methyltransferase/ zinc ion binding
Family
SET
3D structure (top 5)
2F69 2R3A 3F9X 2RFI 1ML9
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494600 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1.011
AT5G43990.1 Score: 1
AT5G43990.3 Score: 1
AT5G43990.4 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1.002
AT5G43990.1 Score: 1
AT5G43990.3 Score: 1
AT5G43990.4 Score: 1

Carica papaya

evm.TU.supercontig_87.14 Score: 1

Populus trichocarpa

243333 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1
AT5G43990.1 Score: 0.948
AT5G43990.3 Score: 0.948
AT5G43990.4 Score: 0.948

Sorghum bicolor

5058210 Score: 1
5058868 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1.002
AT1G04050.1 Score: 1
AT5G43990.1 Score: 1
AT5G43990.3 Score: 1
AT5G43990.4 Score: 1

Expression data

Expressed Sequence Tags

At.10585
Arabidopsis thaliana SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding (SUVR1) mRNA, complete cds /cds=p(102,2306) /gb=NM_100286
At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
At.27206
Arabidopsis thaliana Su(VAR)3-9-related protein 4 (SUVR4) mRNA, complete cds /cds=p(216,1682) /gb=AF408062
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

Pre-SET PF05033 AT5G43990.2
DomainStartEndBit scoreE-value
Pre-SET41856521.15.6e-06
SET567708141.22.9e-39

Sequences