Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G44800.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G44800
Gene model
AT5G44800.1
Gene names and synonyms
CHR4 iHOP
MI-2-LIKE iHOP
Description
CHR4/MI-2-LIKE (chromatin remodeling 4); ATP binding / DNA binding / chromatin binding / helicase
Family
PHD
3D structure (top 5)
1Z3I 1Z5Z 2FWR 1Z63 1WP9
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

917093 Score: 1

Carica papaya

evm.TU.supercontig_30.123 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g31450.1 Score: 1

Physcomitrella patens

145079 Score: 1

Populus trichocarpa

581257 Score: 1

Sorghum bicolor

5000472 Score: 1

Vitis vinifera

GSVIVP00030136001 Score: 1

Zea mays

GRMZM2G014133_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27917
Arabidopsis thaliana CHR4/MI-2-LIKE (chromatin remodeling 4); ATP binding / DNA binding / chromatin binding / helicase (CHR4/MI-2-LIKE) mRNA, complete cds /cds=p(384,7112) /gb=NM_123848
Hv.27235
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf13c12, mRNA sequence /gb=AK249050
Os.10905
Oryza sativa (japonica cultivar-group) Os07g0497000 (Os07g0497000) mRNA, partial cds /cds=p(1,1869) /gb=NM_001066240

Domain Architecture

PHD PF00628 AT5G44800.1
DomainStartEndBit scoreE-value
PHD7712270.75e-18
Chromo53158740.94.7e-09
Chromo60165456.49.8e-14
SNF2_N692982375.58.3e-110
Helicase_C1043111981.72.4e-21

Sequences