Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G51980.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G51980
Gene model
AT5G51980.1
Description
WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative
Family
C3H
3D structure (top 5)
3FRX 1NR0 1YFQ 3EI3 2OVR
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495266 Score: 1

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.993

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.976

Carica papaya

evm.TU.supercontig_4.210 Score: 1

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.993

Arabidopsis thaliana

AT4G25440.1 Score: 1
AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.985

Oryza sativa subsp. japonica

LOC_Os02g45480.1 Score: 1

Physcomitrella patens

3694 Score: 1

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.99

Sorghum bicolor

5055810 Score: 1

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.986

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.99

Arabidopsis thaliana

AT5G51980.1 Score: 1
AT5G51980.2 Score: 0.986

Zea mays

GRMZM2G037200_P02 Score: 1
GRMZM2G166990_P02 Score: 1

Expression data

Expressed Sequence Tags

At.29648
Arabidopsis thaliana WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative (AT5G51980) mRNA, complete cds /cds=p(181,1494) /gb=NM_124577
At.32255
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX828187
Hv.21110
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf171d02, mRNA sequence /gb=AK252654
Os.23123
Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence /cds=p(295,1320) /gb=AK102324
Os.42888
Oryza sativa Japonica Group cDNA clone:J013092E23, full insert sequence /cds=p(1221,1988) /gb=AK111592
Pth.2321
WS0231.B21_O21 PT-MB-A-13 Populus trichocarpa cDNA clone WS0231_O21 3', mRNA sequence /clone=WS0231_O21 /clone_end=3' /gb=CV239284
Ptp.815
T003G04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU830086
Sbi.10177
PI1_32_C10.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE366358
Vvi.1545
EST 3442 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT273H07 3', mRNA sequence /clone=TT273H07 /clone_end=3' /gb=BQ794504

Domain Architecture

zf-CCCH PF00642 AT5G51980.1
DomainStartEndBit scoreE-value
zf-CCCH31554.20.39
zf-CCCH11013520.60.0026
WD4014117929.71.1e-05
WD4026430028.62.3e-05
WD4030434030.36.9e-06

Sequences