Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G56110.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G56110
Gene model
AT5G56110.1
Gene names and synonyms
ATMYB103 iHOP
ATMYB80 iHOP
MS188 iHOP
MYB103 iHOP
Description
ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor
Family
MYB
3D structure (top 5)
1H89 1H8A 2K9N 1GV2 2JUH
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

331925 Score: 1

Carica papaya

evm.TU.supercontig_12.88 Score: 1

Vitis vinifera

GSVIVP00033458001 Score: 1

Expression data

Expressed Sequence Tags

At.10904
Arabidopsis thaliana AtMYB35 (myb domain protein 35); DNA binding / transcription factor (AtMYB35) mRNA, complete cds /cds=p(1,954) /gb=NM_113767
At.10920
Arabidopsis thaliana AtMYB74 (myb domain protein 74); DNA binding / transcription factor (AtMYB74) mRNA, complete cds /cds=p(104,1078) /gb=NM_116749
At.2261
Arabidopsis thaliana ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor (ATM4/ATMYB102) mRNA, complete cds /cds=p(109,1161) /gb=NM_118264
At.2669
Arabidopsis thaliana AtMYB41 (myb domain protein 41); DNA binding / transcription factor (AtMYB41) mRNA, complete cds /cds=p(1,849) /gb=NM_118951
At.48268
Arabidopsis thaliana AtMYB93 (myb domain protein 93); DNA binding / transcription factor (AtMYB93) mRNA, complete cds /cds=p(1,1098) /gb=NM_103190
At.50533
Arabidopsis thaliana ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor (ATMYB103/ATMYB80/MS188/MYB103) mRNA, complete cds /cds=p(1,963) /gb=NM_124993
At.5394
Arabidopsis thaliana AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor (AtMIXTA/AtMYB16) mRNA, complete cds /cds=p(224,1204) /gb=NM_121535
Hv.26842
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence /gb=AK248579
Mtr.19694
EST1224335 MTY Medicago truncatula cDNA clone MTYA430, mRNA sequence /clone=MTYA430 /gb=DW015374
Os.3390
O.sativa mRNA for myb factor, 1355 bp /cds=p(116,1222) /gb=Y11415
Os.58166
Oryza sativa (japonica cultivar-group) Os04g0470600 (Os04g0470600) mRNA, complete cds /cds=p(1,1119) /gb=NM_001059587
Os.80847
Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence /gb=AK288415
Os.83361
Oryza sativa (japonica cultivar-group) Os02g0579300 (Os02g0579300) mRNA, complete cds /cds=p(1,1029) /gb=NM_001053764
Os.9336
CT849551 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa (indica cultivar-group) cDNA clone CONTIG6869, mRNA sequence /clone=CONTIG6869 /gb=CT849551
Ppa.49
P.patens mRNA Pp2 /cds=p(134,1399) /gb=X67050
Pth.12469
UM45TE12.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM45TE12 5', mRNA sequence /clone=UM45TE12 /clone_end=5' /gb=DN500996
Sbi.2545
OX1_61_A11.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_61_A11_A002 5', mRNA sequence /clone=OX1_61_A11_A002 /clone_end=5' /gb=CN138063 /gi=45972186
Sbi.8066
WOUND1_59_F10.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_59_F10_A002 5', mRNA sequence /clone=WOUND1_59_F10_A002 /clone_end=5' /gb=CN148942 /gi=45990343

Domain Architecture

Myb_DNA-binding PF00249 AT5G56110.1
DomainStartEndBit scoreE-value
Myb_DNA-binding146152.41.5e-12
Myb_DNA-binding6711244.24.7e-10

Sequences