Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G58620.1

Identification

Species:
Arabidopsis thaliana
Locus
AT5G58620
Gene model
AT5G58620.1
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
2VGE 1OY3 2FO1 3D9H 1YCS
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

495985 Score: 1

Carica papaya

evm.TU.supercontig_112.7 Score: 1

Ostreococcus tauri

23564 Score: 1

Arabidopsis thaliana

AT2G40140.1 Score: 1
AT2G40140.2 Score: 1
AT5G58620.1 Score: 1

Populus trichocarpa

752023 Score: 1

Vitis vinifera

GSVIVP00024088001 Score: 1

Expression data

Expressed Sequence Tags

At.49189
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G58620) mRNA, complete cds /cds=p(236,2059) /gb=NM_125249
Hv.23976
HVSMEc0016D15f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare subsp. vulgare cDNA clone HVSMEc0016D15f, mRNA sequence /clone=HVSMEc0016D15f /gb=BG310058
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Pba.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Pth.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5592
VV_PEd0013h04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240679

Domain Architecture

Ank PF00023 AT5G58620.1
DomainStartEndBit scoreE-value
Ank579016.50.099
Ank9212728.62.2e-05
zf-CCCH25027528.32.9e-05
zf-CCCH2853070.31.3

Sequences