Gene model: AT5G60410.4

Species: Arabidopsis thaliana Locus AT5G60410 Gene model AT5G60410.4 Gene names and synonyms ATSIZ1 iHOP SIZ1 iHOP Description ATSIZ1/SIZ1; DNA binding Family PHD 3D structure (top 5) 2RNO 1V66 2RNN
	PDB entry: 2RNO 1V66 2RNN

• KEGG
• TAIR

• GabiPD
• PhosPhAT
• ProMEX

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

52345 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1
AT5G60410.1 Score: 0.992

Arabidopsis thaliana

AT5G60410.2 Score: 1.002
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.96

Carica papaya

evm.TU.supercontig_139.75 Score: 1

Coccomyxa sp. C-169

83729 Score: 1

Arabidopsis thaliana

AT5G60410.4 Score: 1
AT5G60410.2 Score: 0.965
AT5G60410.5 Score: 0.965
AT5G60410.1 Score: 0.964
AT5G60410.3 Score: 0.926

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.4 Score: 0.993
AT5G60410.1 Score: 0.992
AT5G60410.2 Score: 0.992
AT5G60410.5 Score: 0.992

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.974
AT5G60410.3 Score: 0.907

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Physcomitrella patens

165698 Score: 1

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.1 Score: 0.99
AT5G60410.2 Score: 0.99
AT5G60410.4 Score: 0.99
AT5G60410.5 Score: 0.99

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.4 Score: 0.986
AT5G60410.1 Score: 0.984
AT5G60410.2 Score: 0.984
AT5G60410.5 Score: 0.984

Sorghum bicolor

4893760 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.975
AT5G60410.3 Score: 0.91

Selaginella moellendorffii

93518 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1
AT5G60410.5 Score: 1
AT5G60410.1 Score: 0.965
AT5G60410.4 Score: 0.931

Vitis vinifera

GSVIVP00024500001 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.974
AT5G60410.3 Score: 0.907

Zea mays

GRMZM2G155123_P02 Score: 1
GRMZM2G155123_P03 Score: 1

Chlamydomonas reinhardtii

330078 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1

• AthaMap - TFBS in the promoter of this gene
• eFP Browser - Uni Toronto - Natural Variation
• MPSS data
• eFP Browser - Uni Toronto - Abiotic stresses
• eFP Browser - Uni Toronto - Developmental processes
• NCBI EST Profile Viewer (UniGene: At.43746)
• NCBI EST Profile Viewer (UniGene: Hv.17786)
• NCBI EST Profile Viewer (UniGene: Hv.27008)
• NCBI EST Profile Viewer (UniGene: Mtr.12920)
• NCBI EST Profile Viewer (UniGene: Mtr.22469)
• NCBI EST Profile Viewer (UniGene: Os.4647)
• NCBI EST Profile Viewer (UniGene: Pth.2061)
• NCBI EST Profile Viewer (UniGene: Sbi.11224)

At.43746

Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572

Hv.17786

HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248

Hv.27008

HU09G06r HU Hordeum vulgare subsp. vulgare cDNA clone HU09G06 5-PRIME, mRNA sequence /clone=HU09G06 /clone_end=5' /gb=CA007920

Mtr.12920

EST510425 HOGA Medicago truncatula cDNA clone pHOGA-23L12 5' end, mRNA sequence /clone=pHOGA-23L12 /clone_end=5' /gb=BG648806

Mtr.22469

EST645260 GPOD Medicago truncatula cDNA clone GPOD-34Z36, mRNA sequence /clone=GPOD-34Z36 /gb=CB066637

Os.4647

Oryza sativa Japonica Group cDNA clone:001-116-F09, full insert sequence /cds=p(251,2878) /gb=AK105290

Pth.2061

Q056A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873482

Sbi.11224

LG1_285_D12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564180

protein sequence
transcript sequence