Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT5G60410.4

Identification

Species:
Arabidopsis thaliana
Locus
AT5G60410
Gene model
AT5G60410.4
Gene names and synonyms
ATSIZ1 iHOP
SIZ1 iHOP
Description
ATSIZ1/SIZ1; DNA binding
Family
PHD
3D structure (top 5)
2RNO 1V66 2RNN
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

52345 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1
AT5G60410.1 Score: 0.992

Arabidopsis thaliana

AT5G60410.2 Score: 1.002
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.96

Carica papaya

evm.TU.supercontig_139.75 Score: 1

Coccomyxa sp. C-169

83729 Score: 1

Arabidopsis thaliana

AT5G60410.4 Score: 1
AT5G60410.2 Score: 0.965
AT5G60410.5 Score: 0.965
AT5G60410.1 Score: 0.964
AT5G60410.3 Score: 0.926

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.4 Score: 0.993
AT5G60410.1 Score: 0.992
AT5G60410.2 Score: 0.992
AT5G60410.5 Score: 0.992

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.974
AT5G60410.3 Score: 0.907

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Physcomitrella patens

165698 Score: 1

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.1 Score: 0.99
AT5G60410.2 Score: 0.99
AT5G60410.4 Score: 0.99
AT5G60410.5 Score: 0.99

Arabidopsis thaliana

AT5G60410.3 Score: 1
AT5G60410.4 Score: 0.986
AT5G60410.1 Score: 0.984
AT5G60410.2 Score: 0.984
AT5G60410.5 Score: 0.984

Sorghum bicolor

4893760 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.975
AT5G60410.3 Score: 0.91

Selaginella moellendorffii

93518 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1
AT5G60410.5 Score: 1
AT5G60410.1 Score: 0.965
AT5G60410.4 Score: 0.931

Vitis vinifera

GSVIVP00024500001 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.974
AT5G60410.3 Score: 0.907

Zea mays

GRMZM2G155123_P02 Score: 1
GRMZM2G155123_P03 Score: 1

Chlamydomonas reinhardtii

330078 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1

Expression data

Expressed Sequence Tags

At.43746
Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572
Hv.17786
HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248
Hv.27008
HU09G06r HU Hordeum vulgare subsp. vulgare cDNA clone HU09G06 5-PRIME, mRNA sequence /clone=HU09G06 /clone_end=5' /gb=CA007920
Mtr.12920
EST510425 HOGA Medicago truncatula cDNA clone pHOGA-23L12 5' end, mRNA sequence /clone=pHOGA-23L12 /clone_end=5' /gb=BG648806
Mtr.22469
EST645260 GPOD Medicago truncatula cDNA clone GPOD-34Z36, mRNA sequence /clone=GPOD-34Z36 /gb=CB066637
Os.4647
Oryza sativa Japonica Group cDNA clone:001-116-F09, full insert sequence /cds=p(251,2878) /gb=AK105290
Pth.2061
Q056A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873482
Sbi.11224
LG1_285_D12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564180

Domain Architecture

SAP PF02037 AT5G60410.4
DomainStartEndBit scoreE-value
SAP114549.31.4e-11
PHD11416835.42e-07
zf-MIZ35940887.73.7e-23

Sequences